Files in sciencepeak/rTCRBCRr
Repertoire Analysis of the Detected Clonotype
.Rbuildignore
.gitattributes
.github/.gitignore
.github/workflows/check-standard.yaml
.github/workflows/r.yml
.gitignore
DESCRIPTION
LICENSE
LICENSE.md
NAMESPACE
R/annotate_chain_name_and_isotype_name.R
R/calculate_IGH_isotype_proportion.R
R/calibrate_proportion_by_clones.R
R/combine_all_sample_repertoire_metrics.R
R/compute_repertoire_metrics_by_chain_name.R
R/data.R
R/format_clonotype_to_immunarch_style.R
R/get_item_name_x_sample_name_for_each_metric.R
R/globals.R
R/merge_convergent_clonotype.R
R/rTCRBCRr-package.R
R/remove_nonproductive_CDR3aa.R
README.Rmd
README.md
data-raw/DATASET.R
data-raw/package_preparation.Rmd
data/all_sample_IGH_chain_all_metrics_wide_format_dataframe.rda
data/all_sample_IGH_chain_all_metrics_wide_format_dataframe_list.rda
data/all_sample_IGH_chain_individual_metrics_dataframe_list.rda
data/all_sample_all_chain_all_metrics_wide_format_dataframe.rda
data/all_sample_all_chain_all_metrics_wide_format_dataframe_list.rda
data/all_sample_all_chain_individual_metrics_dataframe_list.rda
data/chain_separated_dataframe.rda
data/convergent_clonotype_merged_dataframe.rda
data/immunarch_style_dataframe.rda
data/nonproductive_CDR3aa_removed_dataframe.rda
data/raw_input_clonotype_dataframe.rda
data/the_divergent_clonotype_dataframe_list.rda
inst/extdata/mixcr/sample_01.tsv.bz2
inst/extdata/mixcr/sample_02.tsv.bz2
inst/extdata/mixcr/sample_03.tsv.bz2
inst/extdata/trust/sample_01.tsv.bz2
inst/extdata/trust/sample_02.tsv.bz2
inst/extdata/trust/sample_03.tsv.bz2
man/all_sample_IGH_chain_all_metrics_wide_format_dataframe.Rd
man/all_sample_IGH_chain_all_metrics_wide_format_dataframe_list.Rd
man/all_sample_IGH_chain_individual_metrics_dataframe_list.Rd
man/all_sample_all_chain_all_metrics_wide_format_dataframe.Rd
man/all_sample_all_chain_all_metrics_wide_format_dataframe_list.Rd
man/all_sample_all_chain_individual_metrics_dataframe_list.Rd
man/annotate_chain_name_and_isotype_name.Rd
man/calculate_IGH_isotype_proportion.Rd
man/calculate_repertoire_metrics.Rd
man/calibrate_proportion_by_clones.Rd
man/chain_separated_dataframe.Rd
man/combine_all_sample_repertoire_metrics.Rd
man/compute_repertoire_metrics_by_chain_name.Rd
man/convergent_clonotype_merged_dataframe.Rd
man/figures/ggplot2_logo.png
man/figures/logo.png
man/format_clonotype_to_immunarch_style.Rd
man/get_item_name_x_sample_name_for_each_metric.Rd
man/immunarch_style_dataframe.Rd
man/merge_convergent_clonotype.Rd
man/nonproductive_CDR3aa_removed_dataframe.Rd
man/parse_mixcr.Rd
man/parse_trust4.Rd
man/rTCRBCRr-package.Rd
man/raw_input_clonotype_dataframe.Rd
man/remove_nonproductive_CDR3aa.Rd
man/summarize_convergence_function.Rd
man/summarize_repertoire_metrics.Rd
man/the-global-variables.Rd
man/the_divergent_clonotype_dataframe_list.Rd
rTCRBCRr.Rproj
vignettes/.gitignore
vignettes/Quick_Start.Rmd
