scrm/scrm-r: Simulating the Evolution of Biological Sequences
A coalescent simulator that allows the rapid simulation of biological sequences under neutral models of evolution, see Staab et al. (2015) <doi:10.1093/bioinformatics/btu861>. Different to other coalescent based simulations, it has an optional approximation parameter that allows for high accuracy while maintaining a linear run time cost for long sequences. It is optimized for simulating massive data sets as produced by Next- Generation Sequencing technologies for up to several thousand sequences.
Getting started
Browse package contents
Package details |
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| Author | Paul Staab [aut, cph], Zhu Sha [aut, cph], Dirk Metzler [aut, cre, cph, ths], Gerton Lunter [aut, cph, ths] |
| Maintainer | Dirk Metzler <metzler@bio.lmu.de> |
| License | GPL (>= 3) |
| Version | 1.7.5 |
| URL | https://github.com/scrm/scrm-r |
| Package repository | View on GitHub |
| Installation |
Install the latest version of this package by entering the following in R:
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