bed2Julia: send a bed file or df to Julia as a...

bed2JuliaR Documentation

send a bed file or df to Julia as a GenomicFeatures.IntervalCollection with the given name

Description

send a bed file or df to Julia as a GenomicFeatures.IntervalCollection with the given name

Usage

bed2Julia(segs = NULL, file = NULL, name = "mycollection")

Arguments

segs

a dataframe with the segments. The first columns must contain chr, start, end

file

must be a tab separated file with first columns must contain chr, start, end

name

the name to assign the object to

Value

(in Julia) a GenomicFeatures.IntervalCollection without metadata

Note

Make sure GenomicFeatures is loaded in Julia


sdangelis/sdamisc documentation built on Sept. 21, 2022, 11:45 a.m.