In sdgamboa/omicidxClientR: R Package Client for OmicIDX

I created the R package with:

openapi-generator-cli generate -i https://api.omicidx.cancerdatasci.org/openapi.json -g r -o omicidxClientR --git-user-id sdgamboa --git-repo-id omicidxClientR --package-name omicidxClientR

I created an Rstudio project within the package and uploaded to github.

When I loaded the functions, I got these error messages:

# Error in parse(text = lines, n = -1, srcfile = srcfile) : 
#   /home/usuario/Projects/omicidxAPI/omicidxClientR/R/biosample_api.R:159:91: unexpected '['
# 158:     },
# 159:     BiosampleByAccessionBiosampleSamplesAccessionGet = function(accession, include.fields=[
#                                                                                                ^

# Error in parse(text = lines, n = -1, srcfile = srcfile) : 
#   /home/usuario/Projects/omicidxAPI/omicidxClientR/R/sra_api.R:675:90: unexpected '['
# 674:     },
# 675:     ExperimentByAccessionSraExperimentsAccessionGet = function(accession, include.fields=[
#                                                                                               ^

I changed "[]" for "{}" in the biosample_api.R and sra_api.R files within the R directory and I could load all of the functions without errors.

sdgamboa/omicidxClientR documentation built on Dec. 22, 2021, 11:12 p.m.