In sdrowland/RSMod: Creates a 2D or 3D mapping of RNA-Seq Data

getwd()

gene.list=read.csv("All-Weeks-Modules-3D-Whatever.csv",header=T)
gene.list$Annotation=NA
gene.list$itag=substr(gene.list$itag,1,14)

ano.list=read.csv("ITAG3.0-annotation.csv",header=T)
# colnames(ano.list)=c("itag","Annotation")
ano.list$itag=substr(ano.list$itag,1,14)


for(i in 1:nrow(ano.list)){if(ano.list$itag[i] %in% gene.list$itag){gene.list[which(gene.list$itag %in% ano.list$itag[i]),c("Annotation")]=ano.list[i,c("Annotation")]}}

write.csv(gene.list,"Annotated-3D-Modules-Whatever.csv")

sdrowland/RSMod documentation built on July 17, 2021, 7:16 p.m.