pbla_multi: PBLAs for Multitype Stochastic Epidemic Model

In sdtemple/pblas: Pair-based Likelihood Approximations

Description

Run a pair-based likelihood approximation for a multitype stochastic epidemic model. Multitypes available via mapping assignments. Compatible with pbla_std, pbla_ed, pbla_sep, and pbla_f.

Usage

pbla_multi(rates, R, pbla, betamap, gammamap, r, etc = NULL)

Arguments

rates	numeric vector of rates
R	integer index to split rates on
pbla	function
betamap	matrix of assignments
gammamap	vector of assignments
r	numeric vector of increasing removal times
etc	other parameters to pass (e.g. lag)

Value

negative log likelihood

sdtemple/pblas documentation built on Jan. 8, 2022, 8:36 a.m.