Global functions | |
---|---|
adaptive_expand | Source code |
add_attractors_labels | Source code |
add_inter_clusters_connections | Source code |
add_missing_columns | Source code |
add_vertices_to_attractors_graph | Source code |
build_graph | Source code |
check_names | Source code |
cluster_data | Source code |
cluster_fcs_files_in_dir | Source code |
complete.forceatlas2 | Source code |
convert_fcs | Source code |
cosine_similarity_from_matrix | Source code |
cosine_similarity_matrix | Source code |
density_scatterplot | Source code |
distance_from_attractor_hard_filter | Source code |
downsample_by | Source code |
export_clusters | Source code |
filter_similarity_matrix | Source code |
filter_similarity_matrix_by_rank | Source code |
filter_small_populations | Source code |
get_attractors_from_graph_clustering | Source code |
get_celltype_medians | Source code |
get_color_for_marker | Source code |
get_dataset_statistics | Source code |
get_distances_from_attractors | Source code |
get_fcs_col_names | Source code |
get_graph | Source code |
get_graph_centering_transform | Source code |
get_graph_table | Source code |
get_highest_scoring_edges | Source code |
get_number_of_cells_per_landmark | Source code |
get_numeric_vertex_attributes | Source code |
get_summary_table | Source code |
get_vertex_size | Source code |
get_vertex_table | Source code |
layout.forceatlas2 | Source code |
layout_forceatlas2Cpp | Source code |
load_attractors_from_gated_data | Source code |
load_existing_layout | Source code |
mark_nearest_neighbour | Source code |
my_load | Source code Source code |
my_save | Source code |
names_map_factory | Source code |
plot_cluster | Source code |
process_data | Source code |
process_file | Source code |
process_files | Source code |
rescale_size | Source code |
run_analysis_existing | Source code |
run_analysis_gated | Source code |
run_analysis_unsupervised | Source code |
scaffold | Man page |
scaffold-package | Man page |
scaffold.run | Source code |
set_visual_attributes | Source code |
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