epict_model: Load and compile the Cycle thresholds model

In seabbs/epict: Flexible Cycle Threshold Modelling

Load and compile the Cycle thresholds model

Description

Load and compile the Cycle thresholds model

Usage

epict_model(
  model,
  include,
  compile = TRUE,
  threads = FALSE,
  stanc_options = list("O1"),
  verbose = TRUE,
  ...
)

Arguments

model	A character string indicating the path to the model. If not supplied the package default model is used.
include	A character string specifying the path to any stan files to include in the model. If missing the package default is used.
compile	Logical, defaults to TRUE. Should the model be loaded and compiled using cmdstanr::cmdstan_model().
threads	Logical, defaults to FALSE. Should the model compile with support for multi-thread support in chain. Note that this requires the use of the threads_per_chain argument when model fitting using epict() and is not currently supported in model.
stanc_options	A list of options to pass to the stanc_options of cmdstanr::cmdstan_model(). By default "01" is passed which specifies simple optimisations should be done by the prior to compilation.
verbose	Logical, defaults to TRUE. Should verbose messages be shown.
...	Additional arguments passed to cmdstanr::cmdstan_model().

Value

A cmdstanr model.

See Also

Functions used for modelling epict_convert_to_list(), epict_inits(), epict_priors()

Examples

mod <- epict_model()
mod

seabbs/epict documentation built on July 3, 2023, 6:42 a.m.