i2p_model: Load and compile the model

In seabbs/inc2prev: Estimate incidence from Prevalence Estimates

Load and compile the model

Description

Load and compile the model

Usage

i2p_model(
  model = "stan/inc2prev.stan",
  include,
  compile = TRUE,
  threads = FALSE,
  verbose = TRUE,
  optimise = TRUE,
  ...
)

Arguments

model	A character string indicating the path to the model. If not supplied the package default model is used.
include	A character string specifying the path to any stan files to include in the model. If missing the package default is used.
compile	Logical, defaults to TRUE. Should the model be loaded and compiled using cmdstanr::cmdstan_model().
threads	Logical, defaults to FALSE. Should the model compile with support for multi-thread support in chain. Note that this requires the use of the threads_per_chain argument when model fitting using enw_sample(), and epinowcast().
verbose	Logical, defaults to TRUE. Should verbose messages be shown.
...	Additional arguments passed to cmdstanr::cmdstan_model().

Value

A cmdstanr model.

See Also

Other model: i2p_sample()

Examples

mod <- i2p_model()

seabbs/inc2prev documentation built on Nov. 14, 2023, 9:38 p.m.