get_rt: Get equivalent Rt values

Description Usage Arguments Details Value

View source: R/get_rt.R

Description

Get equivalent Rt values

Usage

1
get_rt(obj, lag = 30, forecast_days = 0, iter = seq_along(obj$post$R0))

Arguments

obj

Output from fit_seir().

lag

Time lag for the inputs for Rt.

forecast_days

Number of projection days.

iter

MCMC iterations to include. Defaults to all.

Details

See project_seir() for an example.

Value

A data frame of state values with a column of Rt values. Number of rows is 1 per time step. An NA for Rt where insufficient lagged data are available.


seananderson/covidseir documentation built on June 3, 2021, 6:49 a.m.