seanchen607/FScanR: Detect Programmed Ribosomal Frameshifting Events from mRNA/cDNA BLASTX Output
'FScanR' identifies Programmed Ribosomal Frameshifting (PRF) events from BLASTX homolog sequence alignment between targeted genomic/cDNA/mRNA sequences against the peptide library of the same species or a close relative. The output by BLASTX or diamond BLASTX will be used as input of 'FScanR' and should be in a tabular format with 14 columns. For BLASTX, the output parameter should be: -outfmt '6 qseqid sseqid pident length mismatch gapopen qstart qend sstart send evalue bitscore qframe sframe'. For diamond BLASTX, the output parameter should be: -outfmt 6 qseqid sseqid pident length mismatch gapopen qstart qend sstart send evalue bitscore qframe qframe.
Getting started
Browse package contents
Package details |
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| Bioconductor views | Alignment Annotation Software |
| Maintainer | |
| License | Artistic-2.0 |
| Version | 0.99.7 |
| Package repository | View on GitHub |
| Installation |
Install the latest version of this package by entering the following in R:
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