readRNAQuantRawCounts: Read raw counts from GEO
In seandavi/GEOquery: Get data from NCBI Gene Expression Omnibus (GEO)
readRNAQuantRawCounts R Documentation
Read raw counts from GEO
Description
This function reads the raw counts from a GEO link. The raw counts
are expected to be in a tab-separated file with the first column
containing the gene IDs and the remaining columns containing the
raw counts.
Usage
readRNAQuantRawCounts(link)
Arguments
link
A link to the raw counts file
Details
This function reads the raw counts and returns a matrix with the
gene IDs as the row names, ready for use in creating a
SummarizedExperiment.
Value
A matrix of raw counts with gene IDs as row names
seandavi/GEOquery documentation built on Aug. 8, 2024, 5:22 p.m.
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| readRNAQuantRawCounts | R Documentation |
Read raw counts from GEO
Description
This function reads the raw counts from a GEO link. The raw counts are expected to be in a tab-separated file with the first column containing the gene IDs and the remaining columns containing the raw counts.
Usage
readRNAQuantRawCounts(link)
Arguments
link |
A link to the raw counts file |
Details
This function reads the raw counts and returns a matrix with the gene IDs as the row names, ready for use in creating a SummarizedExperiment.
Value
A matrix of raw counts with gene IDs as row names
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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