Files in seandavi/MungeCuratedMGS
Data munging for Curated Microbiome Signatures
.Rbuildignore
.gitignore
DESCRIPTION
NAMESPACE
R/create_experiment_table.R
R/create_signature_table.R
R/create_statistical_test_table.R
R/create_study_table.R
R/google_sheet_manip.R
R/ontologies.R
R/taxdump.R
R/test_import_export.R
R/utils.R
README.md
inst/extdata/cMD_allfeats.txt.gz
inst/extdata/cMD_metaphlan2ncbi.csv.gz
inst/extdata/curation.csv.gz
inst/extdata/metaphlan2ncbi.txt.gz
inst/extdata/mpa_v30_CHOCOPhlAn_201901_taxonomy.txt.gz
inst/extdata/statisticalTest.tsv
inst/extdata/studyMeta.csv
inst/extdata/validation.csv
man/create_experiment_table.Rd
man/create_keys.Rd
man/create_signature_table.Rd
man/create_statistical_test_table.Rd
man/create_study_table.Rd
man/curation_sheet.Rd
man/dot-read_ontology_from_bioportal_url.Rd
man/experimentCols.Rd
man/get_efo.Rd
man/get_synonyms.Rd
man/get_synonyms_file.Rd
man/get_taxon_dump_files.Rd
man/get_taxon_file.Rd
man/get_taxon_names.Rd
man/get_uberon.Rd
man/google_microbial_sig_sheet.Rd
man/metaphlan2ncbi.Rd
man/studyCols.Rd
man/testImportExport.Rd
vignettes/.gitignore
vignettes/data_munging.Rmd
