get_taxon_dump_files: download and untar ncbi taxonomy
In seandavi/MungeCuratedMGS: Data munging for Curated Microbiome Signatures
Description
Usage
Arguments
Value
Description
download and untar ncbi taxonomy
Usage
1
2
3
4
get_taxon_dump_files(
download_dir = tempdir(),
taxon_dump_url = "ftp://ftp.ncbi.nlm.nih.gov/pub/taxonomy/taxdump.tar.gz"
)
Arguments
download_dir
do file manipulation here
taxon_dump_url
url of 'taxdump.tar.gz' file at NCBI
Value
The path to the directory containing the '.dmp“ files
seandavi/MungeCuratedMGS documentation built on July 17, 2021, 7:17 p.m.
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Description Usage Arguments Value
Description
download and untar ncbi taxonomy
Usage
1 2 3 4 | get_taxon_dump_files(
download_dir = tempdir(),
taxon_dump_url = "ftp://ftp.ncbi.nlm.nih.gov/pub/taxonomy/taxdump.tar.gz"
)
|
Arguments
download_dir |
do file manipulation here |
taxon_dump_url |
url of 'taxdump.tar.gz' file at NCBI |
Value
The path to the directory containing the '.dmp“ files
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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