Man pages for seandavi/SRAdb
A compilation of metadata from NCBI SRA and tools
| ascpR | Fasp file downloading using the ascp command line program |
| ascpSRA | Fasp SRA data file downloading using the ascp command line... |
| colDescriptions | Get column descriptions of SRAmetadb.sqlite |
| entityGraph | Create a new graphNEL object from an input entity matrix or... |
| getFASTQfile | Download SRA fastq files from EBI ENA through ftp or fasp |
| getFASTQinfo | Get SRA fastq file information and associated meta data from... |
| getSRA | Fulltext search SRA meta data using SQLite fts3 module |
| getSRAdbFile | Download and unzip last version of SRAmetadb.sqlite.gz from... |
| getSRAfile | Download SRA data file through ftp or fasp |
| getSRAinfo | Get SRA data file information from NCBI SRA |
| IGVclear | Clear IGV tracks loaded. |
| IGVcollapse | Collapse tracks in the IGV |
| IGVgenome | Set the IGV genome. |
| IGVgoto | Go to a specified region in IGV. |
| IGVload | Load data into IGV via remote port call. |
| IGVsession | Create an IGV session file |
| IGVsnapshot | Make a file snapshot of the current IGV screen. |
| IGVsocket | Create a Socket Connection to IGV. |
| IGVsort | Sort an alignment track by the specified option. |
| listSRAfile | List sra, sra-lite or fastq data file names associated with... |
| sraConvert | Cross-reference between GEO data types |
| SRAdb-package | Query NCBI SRA metadata within R or from a local SQLite... |
| sraGraph | Create a new graphNEL object of SRA accessios from SRA full... |
| startIGV | Start IGV from R with different amount maximum memory support |
