In sebastiz/PhysiMineR: Functions to extract, clean, manipulate and analyse upper gastrointestinal physiological parameters

knitr::opts_chunk$set(results = 'asis', echo = FALSE, comment = FALSE,  warning = FALSE, message = FALSE, fig.align = 'center')
library(knitr)
library(here)
library(EndoMineR)
library(DiagrammeR)
library(CodeDepends)

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Import the data

load(file=here("data", "TheOGDReportFinal.rda"))
load(file=here("data", "PathDataFrameFinal.rda"))

read_chunk(here("inst","TemplateProject","munge", "PreProcessing.R"))

Pre-process both the pathology and the endoscopy text:

Merge endoscopy and pathology text

Clean the endoscopist and instrument columns

Extract number of biopsies, biopsy size, biopsy location and medications from the text

Extract endoscopy events

Extract some generic analyses

Extract some disease specific analyses

Show the Consort diagram

Show the CodeDepends

sebastiz/PhysiMineR documentation built on Oct. 3, 2023, 3:46 p.m.