IrmsData: IrmsData reference class

In sebkopf/isoread: Read IRMS data from isodat files.

Description

IrmsData reference class

Arguments

plotOptions	list of custom plotOptions check internal consistency of data get data for masses
masses	which masses to retrieve, all defined ones by default
melt	whether to melt the data frame plot data ggplot data export data to csv

Fields

plotOptions

holds information about default plotting options

massData

stores the raw mass data

dataTable

stores the processed dataTable

dataTableColumns

stores the definition of which columns exist in the data table and what their proper data types are constructor

Methods

export_data(file, ...)

export the data stored in this object to file

get_data_table(...)

retrieve the data table

get_mass_data(masses = names(.self$plotOptions$masses), melt = FALSE, ...)

get the mass trace data for specific masses, can be provided in melt = TRUE long format for easy use in ggplot style plotting

init_irms_data()

initialize irms data container

make_ggplot(...)

generate a ggplot object for the data in this IrmsData object

plot(...)

plot data with standard plot functions (fast) to standard output

set_plot_options(...)

set plot options, e.g.: set_plot_options(labels = list(xmasses = 'Cycle', ymasses = 'Signal [mV]'))

summarize(file, ....)

summarize the data stored in this object and save it to file

sebkopf/isoread documentation built on Dec. 31, 2021, 4:15 a.m.