README.md

In selbouhaddani/O2PLS: O2PLS: Two-Way Orthogonal Partial Least Squares

NOTE: this repo is now obsolete! Please use the selbouhaddan/OmicsPLS repo for applying O2PLS! Future updates will be pushed there!

O2PLS

Welcome to the O2PLS package page on Github!

O2PLS is designed for integrating two high dimensional datasets and the O2PLS package is an implementation of this method.

Install the package with:

devtools::install_github("selbouhaddani/O2PLS")
library(O2PLS)

If that doesn't work, try the source .tar.gz or the Windows binaries .zip.

For questions, complaints, bugs, etc, you can mail me or file an issue.

When using the O2PLS R-package in your research, please cite the corresponding article by running command

citation("O2PLS")

or copy-paste: Bouhaddani, S., Houwing-duistermaat, J., Jongbloed, G., Salo, P., Perola, M., & Uh, H.-W. (2016). Evaluation of O2PLS in Omics data integration. BMC Bioinformatics BMTL Supplement. DOI: 10.1186/s12859-015-0854-z

Also please see http://atlasofscience.org/simultaneous-integrated-analysis-of-biological-datasets-an-evaluation-of-o2pls/ for a gentle explanation and illustration of the just mentioned article.

Updates

• A new name will be given to this package, please keep this in mind. Apologies for any inconveniences.
• We are working on a software tutorial paper to appear soon! In the meantime just email me for more information on the package.

selbouhaddani/O2PLS documentation built on May 29, 2019, 5:53 p.m.