cavatica_tasks_create: Create Task

In selkamand/utilitybeltcavatica: What the Package Does (One Line, Title Case)

Create Task

Description

Create Task

Usage

cavatica_tasks_create(
  project,
  name,
  app_id,
  inputs = NULL,
  batch = NULL,
  description = NULL,
  use_interruptible_instances = TRUE,
  execution_settings = NULL
)

Arguments

project	a sevenbridges 'Project' object. See readme for instructions on how to create this object
name	name of task
app_id	id of app/workflow to run
inputs	list describing input values. See cavatica_app_inputs() for a list of input paramaters
batch	list describing how to batch task. Construct value passed to function using sevenbridges::batch(). For example: batch = batch(input = "fastq", criteria = c("metadata.sample_id","metadata.noexist_id"))
description	description of task
use_interruptible_instances	use spot instances? (boolean)
execution_settings	control the instance type and maximum number of parallel instances (list, e.g. list(instance_type = "c4.2xlarge;ebs-gp2;2000", max_parallel_instances = 1, use_memoization = false, use_elastic_disk = false))

Value

sevenbridges Task object

selkamand/utilitybeltcavatica documentation built on April 26, 2023, 4:18 p.m.