tsne_long: Run tsne from long data format

In selkamand/utilitybelttsne: What the Package Does (One Line, Title Case)

Run tsne from long data format

Description

Run tsne from long data format

Usage

tsne_long(data, id_col, names_from, values_from, check_duplicates = TRUE, ...)

Arguments

data	long format dataframe - should contain one column with sample level identifiers (data.frame)
id_col	name of column describing ID (string)
names_from	column containing names of the features (string)
values_from	column containing values of the feature
check_duplicates	Should Rtsne check for dups after PCA (bool)
...	Arguments passed on to tsne_wide perplexity tsne perplexity remove_non_numeric_columns remove non numeric columns (bool) remove_zero_variance_columns remove columns with zero variance (bool) return_preprocessed_dt Don't run TSNE. Just preprocess the data then return the data.table bool input_is_mutable_datatable are we allowed to mutate the input dataset in place (Should never be directly set - defaults to false) (bool)

Details

... param also allows user to set any param of Rtsne

Value

Rtsne dataframe

selkamand/utilitybelttsne documentation built on March 4, 2023, 11:52 a.m.