hom_plot_critical_times_by_location: Plot the critical time for each location

In sempwn/cr0eso: Estimation of R0 For Multiple Outbreaks

Plot the critical time for each location

Description

Critical time defined as time in days until the effective R number reduces to one or below. Plot also gives 95 credible interval and attack rate for each location.

Usage

hom_plot_critical_times_by_location(
  posts,
  locations,
  num_cases,
  capacities,
  location_labels = NULL
)

Arguments

posts	Object after calling extract of stan model object of hierarchical model
locations	vector of location names
num_cases	vector of number of cases for each location
capacities	vector of sizes for each location
location_labels	tibble with columns 'site' and 'location'. Will be used to relabel numeric location to values in 'site' column

Note

Naming convention throughout is snake case with prefix "hom_" to denote Hierarcical Outbreak Model

sempwn/cr0eso documentation built on Aug. 21, 2022, 1:35 a.m.