Files in semraulab/phiclust
A clusterability measure for scRNA-seq data
.DS_Store
.Rbuildignore
.Rhistory
.Rproj.user/6C69BF22/sources/prop/1E631E37
.Rproj.user/6C69BF22/sources/prop/3BE73C8F
.Rproj.user/6C69BF22/sources/prop/4350BDF6
.Rproj.user/6C69BF22/sources/prop/4B78F9A3
.Rproj.user/6C69BF22/sources/prop/555C8DE0
.Rproj.user/6C69BF22/sources/prop/67EA9E1B
.Rproj.user/6C69BF22/sources/prop/79EAC918
.Rproj.user/6C69BF22/sources/prop/A3D314A5
.Rproj.user/6C69BF22/sources/prop/B693E172
.Rproj.user/6C69BF22/sources/prop/BEF0845D
.Rproj.user/6C69BF22/sources/prop/INDEX
.Rproj.user/shared/notebooks/3C2DDC9A-Analysis_kidney/1/s/chunks.json
.Rproj.user/shared/notebooks/DAB6398B-Guide_to_phiclust/1/s/chunks.json
.Rproj.user/shared/notebooks/FCD51DA-Guide_to_sigma/1/s/chunks.json
.Rproj.user/shared/notebooks/patch-chunk-names
.Rproj.user/shared/notebooks/paths
.gitignore
DESCRIPTION
LICENSE
NAMESPACE
R/.DS_Store
R/data_kidney.R
R/data_simulation.R
R/fit_mp.R
R/get_info.R
R/get_var_genes.R
R/phiclust.R
R/plot_all_sigmas.R
R/plot_g_phiclust.R
R/plot_mp.R
R/plot_phiclust.R
R/plot_singular_vectors.R
README.md
data/force_gr_kidney.rda
data/out.rda
data/ribosomal_genes.rda
data/sce_kidney.rda
data/splatO.rda
data/stress_genes.rda
man/fit_mp.Rd
man/get_info.Rd
man/get_var_genes.Rd
man/out.Rd
man/paga.coord.Rd
man/phiclust.Rd
man/plot_MP.Rd
man/plot_all_g_phiclusts.Rd
man/plot_all_phiclusts.Rd
man/plot_phiclust.Rd
man/plot_singular_vectors.Rd
man/rb.genes.Rd
man/sce_kidney.Rd
man/splatO.Rd
man/stress.genes.Rd
phiclust.Rproj
vignettes/.DS_Store
vignettes/.gitignore
vignettes/Analysis_kidney.Rmd
vignettes/Analysis_kidney.md
vignettes/Analysis_kidney_files/figure-markdown_github/unnamed-chunk-10-1.png
vignettes/Analysis_kidney_files/figure-markdown_github/unnamed-chunk-11-1.png
vignettes/Analysis_kidney_files/figure-markdown_github/unnamed-chunk-11-2.png
vignettes/Analysis_kidney_files/figure-markdown_github/unnamed-chunk-2-1.png
vignettes/Analysis_kidney_files/figure-markdown_github/unnamed-chunk-6-1.png
vignettes/Analysis_kidney_files/figure-markdown_github/unnamed-chunk-7-1.png
vignettes/Analysis_kidney_files/figure-markdown_github/unnamed-chunk-7-2.png
vignettes/Guide_to_phiclust.Rmd
vignettes/Guide_to_phiclust.md
vignettes/Guide_to_phiclust_files/figure-markdown_github/unnamed-chunk-4-1.png
vignettes/Guide_to_phiclust_files/figure-markdown_github/unnamed-chunk-5-1.png
vignettes/Guide_to_phiclust_files/figure-markdown_github/unnamed-chunk-5-2.png
vignettes/Guide_to_phiclust_files/figure-markdown_github/unnamed-chunk-8-1.png
vignettes/Guide_to_phiclust_files/figure-markdown_github/unnamed-chunk-9-1.png
vignettes/Guide_to_phiclust_files/figure-markdown_github/unnamed-chunk-9-2.png
