get_var_genes: Extract variance driving genes

In semraulab/phiclust: A clusterability measure for scRNA-seq data

Description

This function lists the variance driving genes for each significant singular vector

Usage

get_var_genes(measure_obj, cluster)

Arguments

measure_obj	the measure-object as the output of phiclust
cluster	the name of the cluster of interest, e.g. "Pod"

Value

A matrix, with the columns as the number of significant gene singular vecotrs and the rows contain the 1% genes with highest and lowest values in the gene singular vector

Examples

data("out")
get_var_genes(out, "Group2")

semraulab/phiclust documentation built on Feb. 6, 2022, 12:40 a.m.