concat.spectra: Concatenate a directory of spectra files into a single .csv...
| concat.spectra | R Documentation |
Concatenate a directory of spectra files into a single .csv file. Works on a single directory or a series of directories
Description
Concatenate a directory of spectra files into a single .csv file. Works on a single directory or a series of directories
Usage
concat.spectra(
file.dir = NULL,
out.dir = NULL,
out.filename = NULL,
in.file.ext = ".csv",
out.file.ext = ".csv",
transpose = FALSE,
spec.dataframe = FALSE
)
Arguments
file.dir |
directory of spectra files to process. Currently works on spectra files formatted where each row is a wavelength and associated spectral observation. |
out.dir |
output directory for concatenated spectra files. If not set then the output directory defaults to file.dir (input directory) |
out.filename |
filename for concatenated spectra files |
in.file.ext |
file extension for individual spectra files. Defaults to ".csv" |
out.file.ext |
option to set the output extension. Defaults to ".csv" |
transpose |
option to transpose the spectra to/from row/column major output. This will be applied to both the returned dataframe (optional) and output file. TRUE/FALSE. Default FALSE |
spec.dataframe |
option toreturn a R dataframe containing the concatenated spectral data. TRUE/FALSE |
Author(s)
Shawn P. Serbin
Examples
## Not run:
concat.spectra()
spectra <- concat.spectra(file.dir=file.dir,out.dir=out.dir,out.filename="concat.spectra",
out.file.ext=".csv",transpose=FALSE,spec.dataframe=FALSE)
## End(Not run)
