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DESCRIPTION
Darwin-scenario-NEW.R
LICENSE
NAMESPACE
PhenoTraits.Rproj
R/.DS_Store
R/CreateRateMatrices.R
R/Edge_Scenarios.R
R/Initialize.R
R/Likelihood_Sinba.R
R/MatrixExp_Integration.R
R/RcppExports.R
R/inferSinba.R
R/infer_iter_Sinba.R
R/sim_Phy.R
Simulation_UnrepBurst.R
Test2.R
Tests.R
Untitled2.R
data/.DS_Store
data/data_sim.rda
man/.DS_Store
man/ExpMat_C.Rd
man/addTipChars.Rd
man/birth_Des.Rd
man/comb2matrices.Rd
man/data.sim.Rd
man/edgePatRecode.Rd
man/getEdgeScenarios.Rd
man/getPhyloCTMC_distr.Rd
man/infer2branchTrees.Rd
man/init_char_matrix.Rd
man/iter_new_Qcom.Rd
man/likelihood_Sinba.Rd
man/mk_OneRate.Rd
man/mk_Pindv.Rd
man/mk_Qcom.Rd
man/mk_QcomPartitions.Rd
man/mk_QcomPartitions8.Rd
man/mk_Qindv.Rd
man/mk_QindvZero.Rd
man/mk_RatePars.Rd
man/patternList.Rd
man/print.edge_scenarios.Rd
man/print.sinba.Rd
man/runSinba.Rd
man/simDarwin.Rd
man/simUnrepBurst.Rd
man/simulate_ExpLinLn.Rd
man/vExpMat_C.Rd
src/.DS_Store
src/Mat_Functions.cpp
src/Mat_Functions.o
src/PhenoTraits.so
src/RcppExports.cpp
src/RcppExports.o