runSinba: Title Infer corrleated evolution of two characters using...
In sergeitarasov/PhenoTraits: Trait modeling on phylogenies

runSinba

R Documentation

Title Infer corrleated evolution of two characters using Sinba model

Description

Title Infer corrleated evolution of two characters using Sinba model

Usage

runSinba(
  phy,
  data,
  edge.pattern = NULL,
  Edge.Scenarios,
  root.p = NULL,
  Qindv,
  Pindv = NULL,
  p = NULL,
  ip = NULL,
  lb = 0,
  ub = 100,
  cub.method = "pcubature",
  diagn = FALSE,
  optim.method = "subplex",
  subplex.rounds = 1,
  subplex.n.cores = 1L,
  gensa.its = 100
)