make_init_matrix: Create intial matix for run_hifi

In sergeitarasov/PhyHiFi: Exploring hidden space using RADT

Description

Creates intial matrix for evolutinary agorithm. NA's mean constant (0 or diagonal) cells, 0's mean cells that can potentially change, 1's mean cells with the rate > 0.

Usage

make_init_matrix(part_scheme, set.NA = NULL)

Arguments

part_scheme	partitioning scheme that is a vector where element id is an observable state while the element value is the number of hidden changes
set.NA	a vector that sets main diagonal elements (i.k, i.l) to NA. Good to use if some observable state is known to lack any hidden states. For example if observable state 1.x lacks hidden states than specify set.NA=c(1)

Value

Matrix

Examples

#part_scheme<-c(5, 2, 3)
#names(part_scheme)<-c("s1", "s2", "s3")
#make_init_matrix(part_scheme, set.NA=c(2,3) )
#make_init_matrix(part_scheme)

sergeitarasov/PhyHiFi documentation built on May 13, 2019, 9:52 p.m.