Files in sethiyap/FungalSporeAnalysis
Genomics data analysis of fungal spores.
.DS_Store
.Rbuildignore
.Rhistory
.gitignore
DESCRIPTION
FungalSporeAnalysis.Rproj
NAMESPACE
R/.DS_Store
R/GO_diamond.R
R/bw_corr.R
R/closest_gene_calling_v7.pl
R/genelist_specific_profileplot.R
R/ggplot_heatmap.R
R/lineplot_from_bw.R
R/profiles_normalized_by_control.R
R/save_bw_to_rdata.R
README.Rmd
README.md
_pkgdown.yml
docs/404.html
docs/articles/.DS_Store
docs/articles/AN10316_HA_spore_180_hm.png
docs/articles/AN2415_HA_spore_180_hm.png
docs/articles/AN3116_HA_spore_180_hm.png
docs/articles/AN4219_myc_spore_180_hm.png
docs/articles/AN7997_HA_spore_180_hm.png
docs/articles/Af_spore_NaClGoByColorPvalue.png
docs/articles/Af_spore_ZnGoByColorPvalue.png
docs/articles/Af_spore_kclGoByColorPvalue.png
docs/articles/An_Af_Pm_GOGoByColorPvalue.png
docs/articles/An_CET_genes_exprsn ggplot_hm.png
docs/articles/An_RNAP2_expression_scatterplot.png
docs/articles/An_Spore_Pol2_1030_hm.png
docs/articles/An_Spore_TBP_1030_hm.png
docs/articles/An_Spore_TFIIB_1030_hm.png
docs/articles/An_conidiation_genes_exprsn ggplot_hm.png
docs/articles/An_d3_spore_mRNA_hisat2_lineplot.png
docs/articles/An_mRNA_expression_scatterplot.png
docs/articles/An_septin_genes_exprsn ggplot_hm.png
docs/articles/An_spore_NaClGoByColorPvalue.png
docs/articles/An_spore_TF_bwscatterplot.png
docs/articles/An_spore_ZnGoByColorPvalue.png
docs/articles/An_spore_histone_bwscatterplot.png
docs/articles/An_spore_kclGoByColorPvalue.png
docs/articles/An_spore_temperatureGoByColorPvalue.png
docs/articles/An_spores_maturation_genes_exprsn ggplot_hm.png
docs/articles/An_trehalose_genes_exprsn ggplot_hm.png
docs/articles/An_tubulin_genes_exprsn ggplot_hm.png
docs/articles/H3Ac_veA_wt_spore_2_normalized_hm.png
docs/articles/H3K36me3_veA_wt_spore_2_normalized_hm.png
docs/articles/H3K4me3_veA_wt_spore_2_normalized_hm.png
docs/articles/H3_an_spore_lineplot.png
docs/articles/TBP_veA_wt_spore_tRNA_180_hm.png
docs/articles/af_3day_17day_spore_pol2_1309_hm.png
docs/articles/af_pol2_input_10130_hm.png
docs/articles/an_pol2_3d_6d_17d_1030_hm.png
docs/articles/an_pol2_input_10988_hm.png
docs/articles/an_spore_initiationfactor_5SrDNA_52_hm.png
docs/articles/an_spore_pol3_5SrDNA_52_hm.png
docs/articles/data_access.html
docs/articles/index.html
docs/articles/pkgdown.html
docs/articles/pm_pol2_input_10194_hm.png
docs/articles/pol2_veA_wt_spore_lineplot.png
docs/authors.html
docs/bootstrap-toc.css
docs/bootstrap-toc.js
docs/docsearch.css
docs/docsearch.js
docs/index.html
docs/link.svg
docs/pkgdown.css
docs/pkgdown.js
docs/pkgdown.yml
docs/reference/GO_diamondplot.html
docs/reference/bw_corr.html
docs/reference/genelist_specific_profileplot.html
docs/reference/ggplot_heatmap.html
docs/reference/index.html
docs/reference/lineplot_for_bw.html
docs/reference/profiles_normalized_by_control.html
docs/reference/save_bw_rda.html
docs/sitemap.xml
inst/extdata/plots/AN10316_HA_spore_180_hm.png
inst/extdata/plots/AN2415_HA_spore_180_hm.png
inst/extdata/plots/AN3116_HA_spore_180_hm.png
inst/extdata/plots/AN4219_myc_spore_180_hm.png
inst/extdata/plots/AN7997_HA_spore_180_hm.png
inst/extdata/plots/Af_spore_NaClGoByColorPvalue.png
inst/extdata/plots/Af_spore_ZnGoByColorPvalue.png
inst/extdata/plots/Af_spore_kclGoByColorPvalue.png
inst/extdata/plots/An_Af_Pm_GOGoByColorPvalue.png
inst/extdata/plots/An_CET_genes_exprsn ggplot_hm.png
inst/extdata/plots/An_RNAP2_expression_scatterplot.png
inst/extdata/plots/An_Spore_Pol2_1030_hm.png
inst/extdata/plots/An_Spore_TBP_1030_hm.png
inst/extdata/plots/An_Spore_TFIIB_1030_hm.png
inst/extdata/plots/An_conidiation_genes_exprsn ggplot_hm.png
inst/extdata/plots/An_d3_spore_mRNA_hisat2_lineplot.png
inst/extdata/plots/An_mRNA_expression_scatterplot.png
inst/extdata/plots/An_septin_genes_exprsn ggplot_hm.png
inst/extdata/plots/An_spore_NaClGoByColorPvalue.png
inst/extdata/plots/An_spore_TF_bwscatterplot.png
inst/extdata/plots/An_spore_ZnGoByColorPvalue.png
inst/extdata/plots/An_spore_histone_bwscatterplot.png
inst/extdata/plots/An_spore_kclGoByColorPvalue.png
inst/extdata/plots/An_spore_temperatureGoByColorPvalue.png
inst/extdata/plots/An_spores_maturation_genes_exprsn ggplot_hm.png
inst/extdata/plots/An_trehalose_genes_exprsn ggplot_hm.png
inst/extdata/plots/An_tubulin_genes_exprsn ggplot_hm.png
inst/extdata/plots/H3Ac_veA_wt_spore_2_normalized_hm.png
inst/extdata/plots/H3K36me3_veA_wt_spore_2_normalized_hm.png
inst/extdata/plots/H3K4me3_veA_wt_spore_2_normalized_hm.png
inst/extdata/plots/H3_an_spore_lineplot.png
inst/extdata/plots/TBP_veA_wt_spore_tRNA_180_hm.png
inst/extdata/plots/af_17day_spore_pol2_1309_hm.png
inst/extdata/plots/af_3day_17day_spore_pol2_1309_hm.png
inst/extdata/plots/af_3day_spore_pol2_1309_hm.png
inst/extdata/plots/af_pol2_input_10130_hm.png
inst/extdata/plots/an_pol2_3d_6d_17d_1030_hm.png
inst/extdata/plots/an_pol2_input_10988_hm.png
inst/extdata/plots/an_spore_initiationfactor_5SrDNA_52_hm.png
inst/extdata/plots/an_spore_pol3_5SrDNA_52_hm.png
inst/extdata/plots/pm_pol2_input_10194_hm.png
inst/extdata/plots/pol2_veA_wt_spore_lineplot.png
inst/extdata/sqllite/af_feature_file_s03_m05_r07.sqlite
inst/extdata/sqllite/an_feature_file_s10_m04_r07.sqlite
inst/extdata/sqllite/an_feature_file_s10_m04_r07_tRNA.sqlite
inst/extdata/sqllite/aniger_feature_file_s01_m07_r09_5SrDNA.sqlite
inst/extdata/sqllite/pm_feature_file_fungiDb41.sqlite
man/GO_diamondplot.Rd
man/bw_corr.Rd
man/genelist_specific_profileplot.Rd
man/ggplot_heatmap.Rd
man/lineplot_for_bw.Rd
man/profiles_normalized_by_control.Rd
man/save_bw_rda.Rd
vignettes/pkgdown.Rmd
