GO_diamondplot: GO terms in diamond plot

In sethiyap/FungalSporeAnalysis: Genomics data analysis of fungal spores.

Description

Visualize GO enrichment result in a diamond plot

Usage

GO_diamondplot(data, palette = TRUE, output_name)

Arguments

data	A tibble, with following columns term: character, GO term annotated: numeric, number of genes enriched in the GO-term total: numeric, total number of genes assigned to the GO-term pvalue: numeric, pvalue of enrichment category: character, a group-name to annotate the GO and color the diamonds class: character, optional if there are two categories, second category should be under column class.
palette	Character, to choose from available palette or define a palette.default:TRUE two_color: a palette of pink and green three_color: a palette of orange, pink and green NULL: user input of character vector of colors TRUE: a palette of colors in rainbow
output_name	A character vector containing name of the output plot.default:Sample

Value

a diamond GO plot and image file of same.

Author(s)

pooja sethiya

Examples

## Not run: 

data <- readr::read_delim(system.file("extdata/genesets/an_af_pm_spores_GO.txt" , package = "FungalSporeAnalysis"), col_names = TRUE, delim="\t")
GO_diamondplot(data, output_name = "An_Af_Pm_GO", palette="three_color")


## End(Not run)

sethiyap/FungalSporeAnalysis documentation built on July 31, 2020, 10:26 p.m.