BEARscc_examples: Example data for BEARscc.
In seversond12/BEARscc: BEARscc (Bayesian ERCC Assesstment of Robustness of Single Cell Clusters)
Description
Usage
Format
Value
Source
References
Examples
Description
A toy dataset for applying BEARscc functions as described in the README on
https://bitbucket.org/bsblabludwig/bearscc.git and vignette accompanying
this package on Bioconductor.
Usage
1
data("BEARscc_examples")
Format
And R data file with:
df "data.counts.df" Toy dataframe of endogenous counts
with 117 genes and 50 samples.
df "ERCC.counts.df" Toy dataframe of ERCC counts with 57
spike-ins and 50 samples.
df "ERCC.meta.df" Toy dataframe of spike-in concentration
values and spike-in labels as row names.
[,1] Spike-in actual concentration.
SCEList "BEAR_examples.sce" A SingleCellExpression object
described in more detail in the accompanying vignette.
Value
An R data file containing three data.frame objects and a
single SingleCellExpression object for the purpose
of tutorials, testing, and help file examples.
Source
These data are a subset of observations Drs. Michael White and Richard Owen
in the Xin Lu Lab. Samples were sequenced by the Wellcome Trust Center
for Genomics, Oxford, UK. These data are available in full with GEO
accession number, GSE95155.
References
Source code and README: <https://bitbucket.org/bsblabludwig/bearscc/overview>
Associated preprint: <https://www.biorxiv.org/content/early/2017/06/05/118919>
Examples
1
seversond12/BEARscc documentation built on June 8, 2020, 8:04 a.m.
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Description Usage Format Value Source References Examples
Description
A toy dataset for applying BEARscc functions as described in the README on https://bitbucket.org/bsblabludwig/bearscc.git and vignette accompanying this package on Bioconductor.
Usage
1 | data("BEARscc_examples")
|
Format
And R data file with:
| df | "data.counts.df" | Toy dataframe of endogenous counts with 117 genes and 50 samples. |
| df | "ERCC.counts.df" | Toy dataframe of ERCC counts with 57 spike-ins and 50 samples. |
| df | "ERCC.meta.df" | Toy dataframe of spike-in concentration values and spike-in labels as row names. |
| [,1] | Spike-in actual concentration. | |
| SCEList | "BEAR_examples.sce" | A SingleCellExpression object
described in more detail in the accompanying vignette. |
Value
An R data file containing three data.frame objects and a
single SingleCellExpression object for the purpose
of tutorials, testing, and help file examples.
Source
These data are a subset of observations Drs. Michael White and Richard Owen in the Xin Lu Lab. Samples were sequenced by the Wellcome Trust Center for Genomics, Oxford, UK. These data are available in full with GEO accession number, GSE95155.
References
Source code and README: <https://bitbucket.org/bsblabludwig/bearscc/overview> Associated preprint: <https://www.biorxiv.org/content/early/2017/06/05/118919>
Examples
1 |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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