MALDIquant-defunct: Removed Functions/Methods in Package 'MALDIquant'

In sgibb/MALDIquant: Quantitative Analysis of Mass Spectrometry Data

Removed Functions/Methods in Package MALDIquant

Description

These functions/methods are removed.

Details

plotImsSlice

use plotMsiSlice instead.

totalIonCurrent

signature(object = "MassPeaks"): removed.

totalIonCurrent<-

signature(object = "AbstractMassObject", value = "numeric"): use calibrateIntensity instead.

calibrate

signature(x = "matrix"): use calibrateIntensity instead.

standardizeTotalIonCurrent

signature(object = "list"): use calibrateIntensity instead.

ltrim

signature(object = "AbstractMassObject", minMass = "numeric"): use trim instead.

rtrim

use trim instead.

mergeMassSpectra

use averageMassSpectra instead.

movingAverage

use smoothIntensity instead.

savitzkyGolay

use smoothIntensity instead.

isMassObject

removed.

isMassObjectList

removed.

intensityMatrix

does not support MassSpectrum objects anymore.

sgibb/MALDIquant documentation built on Jan. 26, 2024, 10:04 a.m.