In sgosline/mpnstXenoModeling: MPNST Xenograft Modeling

knitr::opts_chunk$set(echo = TRUE)
library(mpnstXenoModeling)

Get networks and format

For each sample we've computed a mutational network and the distance of each network to the community.

tab<-querySynapseTable('syn22279826')

loadPDXData() # loads all the data

Reshape the data and join with metadata

We also have clinical data associated with the samples

plot(pressure)

Note that the echo = FALSE parameter was added to the code chunk to prevent printing of the R code that generated the plot.

sgosline/mpnstXenoModeling documentation built on Dec. 10, 2022, 8:33 a.m.