shahcompbio/HMMcopy: Copy number prediction with correction for GC and mappability bias for HTS data
Corrects GC and mappability biases for readcounts (i.e. coverage) in non-overlapping windows of fixed length for single whole genome samples, yielding a rough estimate of copy number for furthur analysis. Designed for rapid correction of high coverage whole genome tumour and normal samples.
Getting started
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Package details |
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| Author | Daniel Lai, Gavin Ha, Sohrab Shah |
| Bioconductor views | CopyNumberVariation Microarray Preprocessing Sequencing Visualization |
| Maintainer | Daniel Lai <dalai@bccrc.ca>, Sohrab Shah <sshah@bccrc.ca> |
| License | GPL-3 |
| Version | 1.29.0 |
| Package repository | View on GitHub |
| Installation |
Install the latest version of this package by entering the following in R:
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