pathways:

In shaileshtripathi/ssapbm: self-contained and competitive pathway-based methos (sub sample analysis of pathway-based methods.)

Usage

data("pathways")

Format

The format is: List of 10330 $ GO:0000002: chr [1:23] "1014_at" "1187_at" "1188_g_at" "1287_at" ... $ GO:0000012: chr [1:7] "1287_at" "1299_at" "160033_s_at" "39639_s_at" ... $ GO:0000018: chr [1:56] "1017_at" "1021_at" "1119_at" "1187_at" ... $ GO:0000019: chr [1:7] "1533_at" "1850_at" "1944_f_at" "32869_at" ... $ GO:0000027: chr [1:10] "31952_at" "33668_at" "33677_at" "34085_at" ... $ GO:0000028: chr [1:14] "31330_at" "31568_at" "32412_at" "32413_at" ... $ GO:0000038: chr [1:19] "1350_at" "31718_at" "32537_at" "33265_at" ... $ GO:0000041: chr [1:80] "1346_at" "1798_at" "201_s_at" "32444_at" ... $ GO:0000042: chr [1:8] "32140_at" "32150_at" "32713_at" "37932_at" ... $ GO:0000045: chr [1:60] "1074_at" "1201_at" "1202_g_at" "228_at" ... $ GO:0000050: chr [1:11] "1962_at" "32031_at" "32550_r_at" "32722_at" ... $ GO:0000052: chr [1:11] "34884_at" "35111_at" "35674_at" "36220_at" ... $ GO:0000054: chr [1:9] "1839_at" "1840_g_at" "35262_at" "36858_at" ... $ GO:0000055: chr [1:7] "1839_at" "1840_g_at" "36858_at" "37729_at" ... $ GO:0000056: chr [1:7] "1839_at" "1840_g_at" "37729_at" "38708_at" ... $ GO:0000060: chr [1:64] "1021_at" "1161_at" "1346_at" "1461_at" ... $ GO:0000070: chr [1:104] "1164_at" "1329_s_at" "1342_g_at" "1361_at" ... $ GO:0000075: chr [1:286] "1005_at" "1083_s_at" "1119_at" "1164_at" ... $ GO:0000076: chr [1:10] "1324_at" "1536_at" "32118_at" "32158_at" ... $ GO:0000077: chr [1:193] "1083_s_at" "1119_at" "1166_at" "1191_s_at" ... $ GO:0000079: chr [1:93] "1012_at" "1226_at" "1227_g_at" "1434_at" ... $ GO:0000082: chr [1:323] "1024_at" "1025_g_at" "1083_s_at" "1119_at" ... $ GO:0000083: chr [1:41] "1178_at" "1322_at" "1505_at" "1536_at" ... $ GO:0000086: chr [1:216] "1011_s_at" "1018_at" "1019_g_at" "1237_at" ... $ GO:0000096: chr [1:33] "31850_at" "31883_at" "32003_at" "32122_at" ... $ GO:0000097: chr [1:13] "31883_at" "32897_at" "32962_at" "35343_at" ... $ GO:0000098: chr [1:8] "31883_at" "32122_at" "32962_at" "35649_at" ... $ GO:0000101: chr [1:5] "36566_at" "38267_at" "38268_at" "41126_at" ... $ GO:0000103: chr [1:6] "32214_at" "32852_at" "34411_at" "36233_at" ... $ GO:0000132: chr [1:18] "32569_at" "329_s_at" "33700_at" "33822_at" ... $ GO:0000154: chr [1:6] "32843_s_at" "39173_at" "39357_at" "39883_at" ... $ GO:0000160: chr [1:5] "33087_s_at" "33088_at" "35273_at" "38225_at" ... $ GO:0000183: chr [1:15] "31751_f_at" "33018_at" "34497_at" "34964_at" ... $ GO:0000184: chr [1:94] "1151_at" "1306_at" "1383_at" "237_s_at" ... $ GO:0000185: chr [1:12] "138_at" "1852_at" "187_at" "1911_s_at" ... $ GO:0000186: chr [1:326] "1000_at" "1008_f_at" "1082_at" "1086_at" ... $ GO:0000187: chr [1:180] "1000_at" "1010_at" "1059_at" "1060_g_at" ... $ GO:0000188: chr [1:28] "1005_at" "1292_at" "1437_at" "1443_at" ... $ GO:0000209: chr [1:192] "1164_at" "1166_at" "1191_s_at" "1192_at" ... $ GO:0000212: chr [1:10] "1174_at" "33346_r_at" "34851_at" "34852_g_at" ... $ GO:0000226: chr [1:362] "1020_s_at" "1041_at" "113_i_at" "114_r_at" ... $ GO:0000244: chr [1:12] "1357_at" "33230_at" "33231_at" "33801_at" ... $ GO:0000245: chr [1:56] "1213_at" "1556_at" "32559_s_at" "32560_s_at" ... $ GO:0000255: chr [1:6] "160030_at" "33869_at" "40458_at" "472_at" ... $ GO:0000266: chr [1:19] "1727_at" "1997_s_at" "1998_i_at" "2065_s_at" ... $ GO:0000271: chr [1:85] "1253_at" "1323_at" "1366_i_at" "1367_f_at" ... $ GO:0000272: chr [1:26] "160038_s_at" "31816_at" "32157_at" "32210_at" ... $ GO:0000280: chr [1:465] "1017_at" "1028_at" "1076_at" "1095_s_at" ... $ GO:0000281: chr [1:23] "1675_at" "1754_at" "1912_s_at" "282_at" ... $ GO:0000288: chr [1:50] "1306_at" "1850_at" "1944_f_at" "31950_at" ... $ GO:0000289: chr [1:27] "1306_at" "1850_at" "1944_f_at" "31950_at" ... $ GO:0000291: chr [1:23] "32559_s_at" "32560_s_at" "32974_at" "32975_g_at" ... $ GO:0000301: chr [1:11] "31822_at" "31823_at" "32140_at" "32150_at" ... $ GO:0000302: chr [1:237] "1005_at" "1045_s_at" "1095_s_at" "1097_s_at" ... $ GO:0000303: chr [1:34] "1178_at" "1287_at" "1346_at" "160034_s_at" ... $ GO:0000305: chr [1:35] "1178_at" "1287_at" "1346_at" "160034_s_at" ... $ GO:0000320: chr [1:8] "1253_at" "1925_at" "1996_s_at" "2017_s_at" ... $ GO:0000338: chr [1:9] "1789_at" "248_at" "32234_at" "32539_at" ... $ GO:0000375: chr [1:254] "1031_at" "1213_at" "1248_at" "1276_g_at" ... $ GO:0000377: chr [1:250] "1031_at" "1213_at" "1248_at" "1276_g_at" ... $ GO:0000380: chr [1:36] "140_s_at" "1512_at" "1556_at" "1793_at" ... $ GO:0000381: chr [1:24] "140_s_at" "1512_at" "1556_at" "32804_at" ... $ GO:0000387: chr [1:35] "1357_at" "32559_s_at" "32560_s_at" "32789_at" ... $ GO:0000389: chr [1:9] "335_r_at" "34733_at" "35439_at" "35440_g_at" ... $ GO:0000395: chr [1:5] "36098_at" "36099_at" "37622_r_at" "38675_at" ... $ GO:0000398: chr [1:250] "1031_at" "1213_at" "1248_at" "1276_g_at" ... $ GO:0000413: chr [1:35] "31811_r_at" "32788_at" "33188_at" "33409_at" ... $ GO:0000422: chr [1:152] "1039_s_at" "1130_at" "1154_at" "1244_at" ... $ GO:0000423: chr [1:100] "1130_at" "1154_at" "1244_at" "160034_s_at" ... $ GO:0000429: chr [1:5] "36118_at" "39112_at" "40284_at" "40523_at" ... $ GO:0000436: chr [1:5] "36118_at" "39112_at" "40284_at" "40523_at" ... $ GO:0000447: chr [1:8] "31948_at" "32744_at" "36858_at" "38560_at" ... $ GO:0000459: chr [1:7] "32974_at" "32975_g_at" "33294_at" "36357_at" ... $ GO:0000460: chr [1:20] "31864_at" "31948_at" "32744_at" "32974_at" ... $ GO:0000462: chr [1:24] "31330_at" "31948_at" "32315_at" "32412_at" ... $ GO:0000466: chr [1:16] "31948_at" "32744_at" "32974_at" "32975_g_at" ... $ GO:0000467: chr [1:7] "32974_at" "32975_g_at" "33294_at" "36357_at" ... $ GO:0000469: chr [1:15] "31948_at" "32744_at" "32974_at" "32975_g_at" ... $ GO:0000472: chr [1:5] "38560_at" "38561_at" "38562_g_at" "39475_at" ... $ GO:0000478: chr [1:8] "31948_at" "32744_at" "36858_at" "38560_at" ... $ GO:0000479: chr [1:8] "31948_at" "32744_at" "36858_at" "38560_at" ... $ GO:0000480: chr [1:5] "38560_at" "38561_at" "38562_g_at" "39475_at" ... $ GO:0000578: chr [1:34] "1453_at" "1500_at" "1669_at" "1684_s_at" ... $ GO:0000707: chr [1:5] "1300_at" "34419_at" "37094_at" "37792_s_at" ... $ GO:0000710: chr [1:5] "1017_at" "1719_at" "2003_s_at" "860_at" ... $ GO:0000712: chr [1:11] "1258_s_at" "1581_s_at" "1592_at" "1799_at" ... $ GO:0000715: chr [1:5] "1873_at" "1874_at" "32074_at" "35647_at" ... $ GO:0000718: chr [1:37] "1119_at" "1243_at" "1258_s_at" "1307_at" ... $ GO:0000722: chr [1:36] "1053_at" "1054_at" "1055_g_at" "1119_at" ... $ GO:0000723: chr [1:110] "1053_at" "1054_at" "1055_g_at" "1119_at" ... $ GO:0000724: chr [1:76] "1043_s_at" "1119_at" "1250_at" "1258_s_at" ... $ GO:0000725: chr [1:76] "1043_s_at" "1119_at" "1250_at" "1258_s_at" ... $ GO:0000726: chr [1:43] "1043_s_at" "1187_at" "1188_g_at" "1250_at" ... $ GO:0000729: chr [1:9] "1043_s_at" "1544_at" "1660_at" "1899_s_at" ... $ GO:0000730: chr [1:18] "1043_s_at" "1119_at" "1300_at" "1382_at" ... $ GO:0000731: chr [1:11] "1462_s_at" "1726_at" "1797_at" "34461_at" ... $ GO:0000733: chr [1:11] "1544_at" "1939_at" "1974_s_at" "31618_at" ... $ GO:0000737: chr [1:31] "1713_s_at" "1747_at" "1997_s_at" "1998_i_at" ... $ GO:0000768: chr [1:66] "1067_at" "1068_g_at" "1253_at" "1574_s_at" ... [list output truncated]

Examples

data(pathways)
## maybe str(pathways) ; plot(pathways) ...

shaileshtripathi/ssapbm documentation built on May 29, 2019, 8:06 p.m.