vcfR2migrate: Convert vcfR object to MigrateN format
In shankarkshakya/mypackage:
Description
Usage
Arguments
Details
Value
Description
The function converts vcfR format data to text format that can be used as infile for MigrateN.
Usage
1
vcfR2migrate(vcf, pop, in_pop, out_file)
Arguments
vcf
a vcfR object.
pop
factor of population.
in_pop
population of interest to report in output file.
outfile
name of output file.
Details
This function converts the vcfR object to a text file which can be used downstream for MigrateN.
The function will remove loci with missing data, indels, and multiallelic loci. Thus, only SNPs data are analysed
where length of each locus is 1.
Value
a text file that can be used as an input for MigrateN software (SNP format).
shankarkshakya/mypackage documentation built on March 12, 2021, 5:54 p.m.
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Description Usage Arguments Details Value
Description
The function converts vcfR format data to text format that can be used as infile for MigrateN.
Usage
1 | vcfR2migrate(vcf, pop, in_pop, out_file)
|
Arguments
vcf |
a vcfR object. |
pop |
factor of population. |
in_pop |
population of interest to report in output file. |
outfile |
name of output file. |
Details
This function converts the vcfR object to a text file which can be used downstream for MigrateN. The function will remove loci with missing data, indels, and multiallelic loci. Thus, only SNPs data are analysed where length of each locus is 1.
Value
a text file that can be used as an input for MigrateN software (SNP format).
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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