data/readme.md

In shaoqiangzhang/SCENA: Consensus clustering of single-cell RNA-seq data by enhancing network affinity

Collection of some scRNA-seq datasets

Goolam's dataset

https://www.ebi.ac.uk/arrayexpress/files/E-MTAB-3321/E-MTAB-3321.processed.1.zip

Yan's dataset

https://s3.amazonaws.com/scrnaseq-public-datasets/manual-data/yan/nsmb.2660-S2.csv

Pollen's dataset:

https://s3.amazonaws.com/scrnaseq-public-datasets/manual-data/pollen/NBT_hiseq_linear_tpm_values.txt

Patel's dataset

https://scrnaseq-public-datasets.s3.amazonaws.com/scater-objects/patel.rds

https://www.ncbi.nlm.nih.gov/geo/download/?acc=GSE57872&format=file&file=GSE57872%5FGBM%5Fdata%5Fmatrix%2Etxt%2Egz

Usoskin's dataset:

https://s3.amazonaws.com/scrnaseq-public-datasets/manual-data/usoskin/Usoskin+et+al.+External+resources+Table+1.csv

Kolodziejczyk's dataset

https://s3.amazonaws.com/scrnaseq-public-datasets/manual-data/kolodziejczyk/counttable_es.csv

Zeisel's dataset:

https://s3.amazonaws.com/scrnaseq-public-datasets/manual-data/zeisel/expression_mRNA_17-Aug-2014.txt

Treutlein's dataset:

https://static-content.springer.com/esm/art%3A10.1038%2Fnature13173/MediaObjects/41586_2014_BFnature13173_MOESM31_ESM.txt

https://scrnaseq-public-datasets.s3.amazonaws.com/scater-objects/treutlein.rds

Aditionally, the datasets of Biase, Ting, Deng, and Klein can be downloaded from the following github sites

https://github.com/shaoqiangzhang/scRNAseq_Datasets/

In linux, you can download/ them via git command:

git clone https://github.com/shaoqiangzhang/scRNAseq_Datasets/

The following contains a collection of publicly available datasets used by the Hemberg Group at the Sanger Institute.

https://hemberg-lab.github.io/scRNA.seq.datasets/

shaoqiangzhang/SCENA documentation built on Jan. 11, 2022, 6:20 p.m.