sharksmhi/SHARK4R
Retrieving, Analyzing, and Validating Marine Data from SHARK and Nordic Microalgae

Package index
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Vignettes
Functions
311
Source code
26
Man pages
133
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sharksmhi/SHARK4R: Retrieving, Analyzing, and Validating Marine Data from SHARK and Nordic Microalgae
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API

API for sharksmhi/SHARK4R
Retrieving, Analyzing, and Validating Marine Data from SHARK and Nordic Microalgae

Global functions
.onLoad Source code
SHARK4R Man page
SHARK4R-package Man page
add_hierarchy_column Man page Source code
add_species_info Man page Source code
add_worms_species_info Man page Source code
add_worms_taxonomy Man page Source code
assign_phytoplankton_group Man page
cache_call Source code
check_Bacterioplankton Man page Source code
check_Chlorophyll Man page Source code
check_Epibenthos Man page Source code
check_EpibenthosDropvideo Man page Source code
check_GreySeal Man page Source code
check_HarbourPorpoise Man page Source code
check_HarbourSeal Man page Source code
check_PhysicalChemical Man page Source code
check_Phytoplankton Man page Source code
check_Picoplankton Man page Source code
check_PrimaryProduction Man page Source code
check_RingedSeal Man page Source code
check_SealPathology Man page Source code
check_Sedimentation Man page Source code
check_Zoobenthos Man page Source code
check_Zooplankton Man page Source code
check_algaebase_api Man page Source code
check_bacterial_carbon Man page Source code
check_bacterial_concentration Man page Source code
check_bacterial_production Man page Source code
check_chlorophyll_conc Man page Source code
check_code_proj Man page Source code
check_data_version Man page Source code
check_datatype Man page Source code
check_deliv_Bacterioplankton Man page Source code
check_deliv_Chlorophyll Man page Source code
check_deliv_Epibenthos Man page Source code
check_deliv_EpibenthosDropvideo Man page Source code
check_deliv_GreySeal Man page Source code
check_deliv_HarbourPorpoise Man page Source code
check_deliv_HarbourSeal Man page Source code
check_deliv_PhysicalChemical Man page Source code
check_deliv_Phytoplankton Man page Source code
check_deliv_Picoplankton Man page Source code
check_deliv_PrimaryProduction Man page Source code
check_deliv_RingedSeal Man page Source code
check_deliv_SealPathology Man page Source code
check_deliv_Sedimentation Man page Source code
check_deliv_Zoobenthos Man page Source code
check_deliv_Zooplankton Man page Source code
check_depth Man page Source code
check_epibenthos_abundclass_logical Man page Source code
check_epibenthos_counted Man page Source code
check_epibenthos_cover_logical Man page Source code
check_epibenthos_coverclass_logical Man page Source code
check_epibenthos_coverpercent_logical Man page Source code
check_epibenthos_dryweight Man page Source code
check_epibenthos_sedimentdepos_logical Man page Source code
check_epibenthos_specdistr_maxdepth Man page Source code
check_epibenthos_specdistr_mindepth Man page Source code
check_epibenthos_totcover_logical Man page Source code
check_greyseal_counted Man page Source code
check_harbourseal_counted Man page Source code
check_harbporp_positivemin Man page Source code
check_lonlat Source code
check_onland Man page Source code
check_phytoplankton_abund Man page Source code
check_phytoplankton_biovol Man page Source code
check_phytoplankton_carbon Man page Source code Source code
check_picoplankton_abundance Man page Source code
check_picoplankton_biovol Man page Source code
check_picoplankton_carbon Man page Source code
check_picoplankton_counted Man page Source code
check_primaryproduction_carbonprod Man page Source code
check_primaryproduction_carbonprod_hour Man page Source code
check_primaryproduction_carbonprodlight Man page Source code
check_ringedseal_calccounted Man page Source code
check_station_distance Man page Source code
check_value_logical Man page Source code
check_zero_positions Man page Source code
check_zero_value Man page Source code
check_zoobenthos_BQIm Man page Source code
check_zoobenthos_BQIm_logical Man page Source code
check_zoobenthos_abund Man page Source code
check_zoobenthos_counted Man page Source code
check_zoobenthos_wetweight Man page Source code
check_zoobenthos_wetweight_logical Man page Source code
check_zooplankton_abund Man page Source code
check_zooplankton_carbon Man page Source code
check_zooplankton_counted Man page Source code
check_zooplankton_length_mean Man page Source code
check_zooplankton_length_median Man page Source code
check_zooplankton_wetweight Man page Source code
check_zooplankton_wetweight_area Man page Source code
check_zooplankton_wetweight_volume Man page Source code
clear_cache Source code
construct_dyntaxa_missing_table Man page Source code
construct_dyntaxa_table Man page Source code
data_deliverer_filter Man page Source code
defunct Man page
download_file Man page Source code
download_sharkdata Man page Source code
extract_algaebase_field Man page Source code
fill_na_below_first_non_na Man page Source code
filter_outdated_datasets Man page Source code
find_descendants Man page Source code
gather_species_info Man page Source code
gather_worms_species_info Man page Source code
get_algaebase_genus Man page Source code
get_algaebase_species Man page Source code
get_all_parents Man page Source code
get_dyntaxa_children_hierarchy Man page Source code
get_dyntaxa_children_ids Man page Source code
get_dyntaxa_dwca Man page Source code
get_dyntaxa_parent_ids Man page Source code
get_dyntaxa_records Man page Source code
get_geographical_info Man page Source code
get_hab_list Man page Source code
get_hierarchy Man page Source code
get_nua_external_links Man page Source code
get_nua_harmfulness Man page Source code
get_nua_media_links Man page Source code
get_nua_taxa Man page Source code
get_shark_data Man page
get_shark_options Man page
get_shark_table Man page Source code
get_shark_table_counts Man page
get_toxin_list Man page Source code
get_worms_records Man page
get_worms_records_name Man page
get_xy_clean Source code
get_xy_clean_duplicates Source code
ifcb_is_near_land Man page Source code
ifcb_which_basin Man page Source code
list_cache Source code
load_dataset_names Man page Source code
load_dataset_types Man page Source code
load_dyntaxa_taxonomy Man page Source code
load_sharkdata Man page Source code
load_worms_taxonomy Man page Source code
lookup_xy Man page Source code
lookup_xy_chunk Source code
match_algaebase Man page Source code
match_dyntaxa Man page Source code
match_station Man page Source code
match_taxon_name Man page Source code
match_wormstaxa Man page Source code
missing_fields Source code
missing_values Source code
nominal_station Man page Source code
parse_scientific_names Man page Source code
plot_map_leaflet Man page Source code
plot_map_leaflet_deliv Man page Source code
read_data Man page Source code
read_species_list Man page Source code
scatterplot Man page Source code
service_call Source code
shark_read Man page Source code
shark_read_deliv Man page Source code
shark_read_deliv_xls Man page Source code
shark_read_zip Man page Source code
update_data Man page Source code
update_dyntaxa_taxonomy Man page Source code
update_worms_taxonomy Man page Source code
validate_dataset_names Man page Source code
year_filter Man page Source code
sharksmhi/SHARK4R documentation built on Jan. 9, 2025, 5:15 p.m.

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