update_worms_taxonomy: Retrieve and Organize WoRMS Taxonomy for SHARK Aphia IDs

In sharksmhi/SHARK4R: Retrieving, Analyzing, and Validating Marine Data from SHARK and Nordic Microalgae

Retrieve and Organize WoRMS Taxonomy for SHARK Aphia IDs

Description

This function was deprecated and replaced by a function with more accurate name. Use add_worms_taxonomy() instead.

This function collects WoRMS (World Register of Marine Species) taxonomy information for a given set of Aphia IDs. The data is organized into a full taxonomic table that can be joined with data downloaded from SHARK.

Usage

update_worms_taxonomy(aphia_id, aphiaid = deprecated())

Arguments

aphia_id	A numeric vector containing Aphia IDs for which WoRMS taxonomy needs to be updated.
aphiaid	Use aphia_id instead.

Value

A data frame containing updated WoRMS taxonomy information.

See Also

https://CRAN.R-project.org/package=worrms

get_shark_data, update_dyntaxa_taxonomy, WoRMS API Documentation

Examples

## Not run: 
# Update WoRMS taxonomy for a set of Aphia IDs
updated_taxonomy <- update_worms_taxonomy(c(149619, 149122, 11))
print(updated_taxonomy)

## End(Not run)

sharksmhi/SHARK4R documentation built on Jan. 9, 2025, 5:15 p.m.