shaunpwilkinson/kmer: Fast K-Mer Counting and Clustering for Biological Sequence Analysis
Contains tools for rapidly computing distance matrices and clustering large sequence datasets using fast alignment-free k-mer counting and recursive k-means partitioning. See Vinga and Almeida (2003) <doi:10.1093/bioinformatics/btg005> for a review of k-mer counting methods and applications for biological sequence analysis.
Getting started
Browse package contents
Package details |
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| Author | Shaun Wilkinson [aut, cre] |
| Maintainer | Shaun Wilkinson <shaunpwilkinson@gmail.com> |
| License | GPL-3 |
| Version | 1.1.2.9000 |
| URL | http://github.com/shaunpwilkinson/kmer |
| Package repository | View on GitHub |
| Installation |
Install the latest version of this package by entering the following in R:
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