Files in sheng-liu/SeqData
A data structure and four simple tools build upon it for sequencing data analysis
DESCRIPTION
NAMESPACE
R/AllClasses.R
R/AllGenerics.R
R/SeqData-accessors.R
R/SeqData-helperFunctions.R
R/annotatePeaks-methods.R
R/countReads-methods.R
R/findPeaks-methods.R
R/getBaseAlignment-methods.R
R/getBaseScore-method.R
R/getFeatureAnnotation.R
R/getReadAlignment.R
R/getReadCoverage.R
R/summarizeBases-method.R
R/viewCoverage-methods.R
SeqData.Rproj
SeqDataTools.Rproj
data/TE.rda
data/repeats.rda
data/retro.rda
data/transposon.rda
inst/.DS_Store
inst/extdata/.DS_Store
inst/extdata/chrY.bam
inst/extdata/chrY.bam.bai
inst/extdata/chrY_mC.csv
inst/extdata/refGene.csv
inst/extdata/rmasker_repClassLTR.csv
man/.DS_Store
man/SeqData-class.Rd
man/annotatePeaks-methods.Rd
man/countReads-methods.Rd
man/findPeaks-methods.Rd
man/summarizeBases-methods.Rd
man/viewCoverage-methods.Rd
