VisRegnorm: Visualize gene count normalization based on regression.

Description Usage Arguments Examples

Description

Loess and size factor normalization from DESeq package are used. This function is used to visualze the fit and do comparisons.

Usage

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VisRegnorm(gene, spikein, x.col=1, y.col=2)

Arguments

gene

Gene count data as a matrix or data.frame.

spikein

Spikein count data as a matrix or data.frame.

x.col

X sample column position or sample name. Can be integer or character.

y.col

Y sample column position or sample name. Can be integer or character.

Examples

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##---- Should be DIRECTLY executable !! ----
##-- ==>  Define data, use random,
##--	or do  help(data=index)  for the standard data sets.

## The function is currently defined as
function (x) 
{
  }

shenlab-sinai/shen-bioinfo-R documentation built on May 29, 2019, 9:23 p.m.