Man pages for shenorrLab/cellAlign
Global and local alignment of single cell trajectories
| calcDistMat | Title Calculate dissimilarity matrix (local cost matrix) |
| findGlobalMinima | This function calculates the global minima of the cost... |
| findLocalMinima | This function calculates the local minima of the lm matrix;... |
| globalAlign | Title Performs global alignment between two single-cell... |
| ind2sub | Title Convert linear indices to a row-columns matrix |
| interWeights | Title interpolation of the expression data along one... |
| localAlign | Title Performs local alignment between two single-cell... |
| localAlignAutoThreshold | Title Performs local alignment between two single-cell... |
| mapRealDataGlobal | Title Mapping of real cells into the trajectory for global... |
| mapRealDataLocal | Title Mapping of real cells into the trajectory for local... |
| plotAlign | Title Plot the alignment over the dissimilarity matrix |
| plotMapping | Title Plot the alignment-based mapping between real cells... |
| pseudotimeClust | Title cluster genes based on their pseudotime shifts |
| scaleInterpolate | Title Scale interpolated data to [0,1] |
| sub2ind | Title Convert a row-column vector to a linear index |
