calcDistMat | Title Calculate dissimilarity matrix (local cost matrix) |
findGlobalMinima | This function calculates the global minima of the cost... |
findLocalMinima | This function calculates the local minima of the lm matrix;... |
globalAlign | Title Performs global alignment between two single-cell... |
ind2sub | Title Convert linear indices to a row-columns matrix |
interWeights | Title interpolation of the expression data along one... |
localAlign | Title Performs local alignment between two single-cell... |
localAlignAutoThreshold | Title Performs local alignment between two single-cell... |
mapRealDataGlobal | Title Mapping of real cells into the trajectory for global... |
mapRealDataLocal | Title Mapping of real cells into the trajectory for local... |
plotAlign | Title Plot the alignment over the dissimilarity matrix |
plotMapping | Title Plot the alignment-based mapping between real cells... |
pseudotimeClust | Title cluster genes based on their pseudotime shifts |
scaleInterpolate | Title Scale interpolated data to [0,1] |
sub2ind | Title Convert a row-column vector to a linear index |
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