README.md

In shiandy/bst235project:

BST 235 Final Project: Link Violation in GLMs

Andy Shi, Linglin Huang, Helian Feng

Final project for BIOSTAT 235, Fall 2017, Harvard T.H. Chan School of Public Health.

How to Install

This is an R package developed for the simulation part of our BST 235 Project. You can install the package using

if (!require(devtools)) {
    install.packages("devtools")
}
devtools::install_github("shiandy/bst235Project")

Guide

The main simulation functions are found in R/simulation.R, with some helper functions in R/fit_true_model.R. The code to recreate the figures is in the vignettes folder. To recreate the figures, first you need to run run-simulation.R, which will run the simulation and store the results in data/simdata.csv. The simulation is configured to run on 4 cores/CPUs in parallel, and should take about 2.5 hours to complete. Then, running the vignette in bst235_finalproject.Rmd will generate all the necessary figures/plots. The vignette also runs a small experiment, so running the code in the vignette may also take some time.

Presentation and Final Writeup

Our presentation is in the file presentation-5-handout_final.pdf and the final writeup is in the file bst235-writeup-problem5_final.pdf.

shiandy/bst235project documentation built on May 14, 2019, 2:01 a.m.