CorrBoxPlot: Creates Correlation Box Plots

In shilab/meQTL_functions: What the package does (short line)

Usage

CorrBoxPlot(mEQTL, threshold, expr, genot, visual = FALSE,
pdf_file = "", crlt = 0, cis = TRUE)

Arguments

mEQTL	The name of the variable containing the results from mxeqtl. Required.
threshold	FDR cutoff. Required.
expr	The file containing the expression data. Needs to be loaded: expr = read.table(file_name, header = TRUE, stringsAsFactors = FALSE,na.string="NA"); Required.
genot	The file containing the genotype data. Needs to be loaded: genot = read.table(file_name, header = TRUE, stringsAsFactors = FALSE,na.string="NA"); Required.
visual	Set to TRUE to print plots to PDF file. Optional.
pdf_file	Name of PDF file for plots. Optional
crlt	Correlation cutoff, for filtering plots. Default is 0, no filtering. Optional
cis	Set to FALSE if results contain trans eQTLs.

shilab/meQTL_functions documentation built on May 29, 2019, 9:25 p.m.