import.ace.from.10X: A simple wrapper to import data from a 10X experiment folder...

In shmohammadi86/ACE: ACTIONetExperiment container object

A simple wrapper to import data from a 10X experiment folder (v2 or v3) and constructs an 'SingleCellExeriment' object

Description

A simple wrapper to import data from a 10X experiment folder (v2 or v3) and constructs an 'SingleCellExeriment' object

Usage

import.ace.from.10X(input_path, version = 3, prefilter = FALSE, ...)

Arguments

input_path	Folder containing input files
version	2 or 3
prefilter	Whether to prefilter genes/cells based on the counts.mat
min.cell.frac.per.gene	Minimum fraction of cells capturing a gene for it to be retained, if prefilter=TRUE (default=0.005)
min.genes.per.cell	Minimum number of required captured genes per cell, if prefilter=TRUE (default=500)

Value

'SingleCellExeriment' object

Examples

ace = import.ace.from.10X(input_path, prefilter=TRUE, min_feats_per_cell = 500)

shmohammadi86/ACE documentation built on Sept. 13, 2023, 8:53 p.m.