README.md

In shramkoartem/nsga3: An Implementation of Non-Dominated Sorting Genetic Algorithm III for Feature Selection

nsga3

NSGA III for Multi-Objective Feature Selection

An adaptation of Non-dominated Sorting Genetic Algorithm III for multi objective feature selection tasks in R programming language. Non-dominated Sorting Genetic Algorithm III is a genetic algorithm that solves multiple optimization problems simultaneously by applying a non-dominated sorting technique. It uses a reference points based selection operator to explore solution space and preserve diversity. See the paper by K. Deb and H. Jain (2014) for a detailed description of the algorithm.

https://cran.r-project.org/web/packages/nsga3/nsga3.pdf

Update

This is a 0.0.4 version, which is ahead of the 0.0.3 CRAN version by: added a backup option adjusted classifier output dependency

Description

This adaptation of NSGA III algorithm for Multi Objective Feature Selection is currently available only for classification tasks.

As any other Genetic Algorithm (GA), NSGA III includes following steps: An initial population Pt of a size N is created A model is trained on each individual (subset) and fitness values are assigned An offsping population of a size N is created by crossover and mutation operators The offspring population is combined with its parent population A combined population of a size 2N is split into Pareto Fronts using non-dominated sorting technique A next generation's population Pt+1 of size N is selected from the top Pareto Fronts with help of elitism based selection operator

The loop is repeated until the final generation is reached Each generation is populated by individuals representing different subsets. Each individual is represented as a binary vector, where each gene represents a feature in the original dataset.

Example

xgb_learner <- mlr::makeLearner("classif.xgboost", predict.type = "prob",
                             par.vals = list(
                             objective = "binary:logistic",
                             eval_metric = "error",nrounds = 2))

rsmp <- mlr::makeResampleDesc("CV", iters = 2)
measures <- list(mlr::mmce)

f_auc <- function(pred){auc <- mlr::performance(pred, auc)
                         return(as.numeric(auc))}
objective <- c(f_auc)
o_names <- c("AUC", "nf")
par <- rPref::high(AUC)*rPref::low(nf)

nsga3fs(df = german_credit, target = "BAD", obj_list = objective,
         obj_names = o_names, pareto = par, pop_size = 1, max_gen = 1,
         model = xgb_learner, resampling = rsmp,
         num_features = TRUE, r_measures = measures, cpus = 2)

keywords: NSGA III, NSGA-III, NSGA 3, nsga 3, nsga iii, nsga-iii

shramkoartem/nsga3 documentation built on May 28, 2019, 9:53 p.m.