run.owas: Main function

In shuangsong0110/OWAS: Openness Weighted Association Studies: Leveraging Personal Genome Information to Prioritize Noncoding Variants

Main function

Description

Run OWAS

Usage

run.owas(
  ctype,
  gwas,
  trait = "test",
  ldpath,
  path,
  plinkpath,
  chr = 1:22,
  clump = T
)

Arguments

ctype	celltype
gwas	GWAS summary statistics, need to include rsid, chr, a1, a2, z, p (header is necessary)
trait	trait name
ldpath	path for plink bfiles for the chromosome-wise LD reference;(e.g. 1000 Genome Project)
path	specify the output path
plinkpath	chromosome, can be a integer or vector from 1 to 22, default=1:22
chr	chromosome, can be a integer or vector from 1 to 22, default=1:22

shuangsong0110/OWAS documentation built on April 2, 2024, 2:06 p.m.