mutations: TCGA breast invasive carcinoma (BRCA) gene-level nonsilent...
In shunsambongi/sambcdata: Select TCGA Breast Cancer datasets
Description
Usage
Format
Details
Description
TCGA breast invasive carcinoma (BRCA) somatic mutation data. Sequencing data
are generated on a IlluminaGA system. The calls are generated at Genome
Institute at Washington University Sequencing Center using the WashU pipeline
method.
Usage
1
Format
An untidy dataframe with genes as rows and samples as columns.
Details
"1" indicates that a non-silent somatic mutation (nonsense, missense,
frame-shift indels, splice site mutations, stop codon readthroughs, change of
start codon, inframe indels) was identified in the protein coding region of a
gene, or any mutation identified in a non-coding gene. "0" indicates that
none of the above mutation calls were made in this gene for the specific
sample.
shunsambongi/sambcdata documentation built on May 24, 2019, 5:05 a.m.
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Description Usage Format Details
Description
TCGA breast invasive carcinoma (BRCA) somatic mutation data. Sequencing data are generated on a IlluminaGA system. The calls are generated at Genome Institute at Washington University Sequencing Center using the WashU pipeline method.
Usage
1 |
Format
An untidy dataframe with genes as rows and samples as columns.
Details
"1" indicates that a non-silent somatic mutation (nonsense, missense, frame-shift indels, splice site mutations, stop codon readthroughs, change of start codon, inframe indels) was identified in the protein coding region of a gene, or any mutation identified in a non-coding gene. "0" indicates that none of the above mutation calls were made in this gene for the specific sample.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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