marker: Marker matrix used in the simulations

In shuxiaoc/agRank: Rank Aggregation in Phenotypic Selection

Description

The genotype data are wheat marker sequences from Kansas State Genotyping Lab (KSG), available in the Triticeae Toolbox. Marker data are filtered by maximum missing data = 8% and minimum MAF = 5%, and we get 368 lines with 9928 markers for each line. The marker matrix is coded in (-1, 0, 1).

Usage

data(marker)

Format

An object of class matrix with 368 rows and 9928 columns.

Source

https://triticeaetoolbox.org/wheat/display_genotype.php?function=typeData&mm=8&mmaf=5&trial_code=2014_TCAP_ABB_SRW_Mid

Examples

data(marker)
dim(marker) #368 lines, 9928 loci

shuxiaoc/agRank documentation built on May 29, 2019, 9:27 p.m.